After a bit of mucking about and assistance from Kinook I have altered the error counting function I posted to this thread. DevStudio generated null characters in it's compiler log output file and the nulls were getting JScript into a strange state. The new version of the function skips the null characters to "fix" the problem.
I've also included a function that checks for a nasty link error that happens occasionally. In my builds, if I get such and error, I simply retry the compile.
Peter
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