The version is typically stored in the ProductVersion property (updated from the Wise action via a Property/Value setting for ProductVersion). To update a value in a different table, you could use the WfWI automation object model to set the desired value. For instance, add this VBScript to the Wise step's vbld_StepStarted script event (step properties -> Script Editor -> step tab -> Events -> vbld_StepStarted):
Set wise = CreateObject("WFWI.Document")
fname = Step.ExpProperty(Builder, "Filename")
wise.Open fname
Set tblSumm = wise.WTables("Summary")
tblSumm.WRows.Row("<version # row key>").WColumns("Value").Data = Application.ExpandMacrosAndScript("%VER_MACRO%")
wise.Save fname
replacing <version # row key> and VER_MACRO as appropriate.
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