@wordmuse & @critStock: I use EverNote 2.2.x every single day and absolutely LOVE it's implementation of the tag tree. (@critStock: EverNote 2.2.x allowed for creating "shortcuts" to tags within the tree, so you could bury the tag in a sub-sub-sub (etc) folder and create a shortcut to it on your top level.
I love that I can style (bold, italics, color, etc) my tag names, and that I can automatically assign tags based on keywords. AND that EverNote visually differentiated between automatically-assigned tags and manually assigned.
If URp were to improve upon that already-solid base, that would be amazing.
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