The Import (More) option is checked by default, which will prevent duplicate items from being created for the same url value. Since the .eml file was saved to the same folder as a previously imported .eml file (with the same filename), Ultra Recall assumed it was the original file and synced the existing item with the new contents.
You can disable this feature by unchecking the "Create logically linked items for duplicate URLs" checkbox, found on the "Import (More)" tab of the Options Dialog (accessed on the menu at Tools | Options).
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