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Just a stab in the dark...
From the Root node, File | Export - to xml, select to export ALL fields, recurse subfolders, then do the replace on the resulting xml file in your favorite text editor.
Open a new database in UR, then File | Import the modified xml.
'Course depending on your existing UR tree structure you may not need to start the export from the Root.
Unless anyone else has a better method.
If you can, store your local files in a subfolder structure below your UR database, then the import function (copy/link/move actions) will store a relative path in the URL attribute. Otherwise, you get the absolute path that you have experienced.
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